A list of published literature related to the USAMM/USDOS project.

Beck-Johnson, L.M., Gorsich, E.E., Hallman, C., Tildesley, M.J., Miller, R.S., Webb, C.T. 2023. An exploration of within-herd dynamics of a transboundary livestock disease: A foot and mouth disease case study. Epidemics, 42, 100668

Sellman, S., Beck-Johnson, L.M., Hallman, C., Miller, R.S., Owers Bonner, K.A., Portacci, P., Webb, C.T., Lindström, T. 2022. Modeling Nation-Wide U.S. Swine Movement Networks at the Resolution of the Individual Premises. Epidemics 41 (December)

Sellman, S., Beck-Johnson, L.M., Hallman, C., Miller, R.S., Owers Bonner, K.A., Portacci, P., Webb, C.T., Lindström, T. 2022. Modeling U.S. Cattle Movements until the Cows Come Home: Who Ships to Whom and How Many? Computers and Electronics in Agriculture 203 (December)

Gilbertson, K., Brommesson, P., Minter, A., Hallman, C., Miller, R.S., Portacci, K., Sellman, S., Tildesley, M.J., Webb, C.T., Lindström, T., Beck-Johnson, L.M. 2022. The Importance of Livestock Demography and Infrastructure in Driving Foot and Mouth Disease Dynamics. Life 12 (10)

Brommesson, P., Sellman, S., Beck-Johnson, L.M., Hallman, C., Murrieta, D., Webb, C.T., Miller, R.S., Portacci, K., Lindström, T. 2021. Assessing intrastate shipments from interstate data and expert opinion. Royal Society Open Science, 8(3). 192042

Sellman, S., Tildesley, M.J., Burdett, C.L., Miller, R.S., Hallman, C., Webb, C.T., Wennergren, U., Portacci, K., Lindström, T. 2020. Realistic Assumptions about Spatial Locations and Clustering of Premises Matter for Models of Foot-and-Mouth Disease Spread in the United States. PLOS Computational Biology 16 (2): 1–22

Beck-Johnson, L.M., Hallman, C., Miller, R.S., Portacci, K., Gorsich, E.E., Grear, D.A., Hartmann, K., Webb, C.T., 2019. Estimating and exploring the proportions of inter- and intrastate cattle shipments in the United States. Prev. Vet. Med. 162, 56–66.

Tsao, K., Sellman, S., Beck-Johnson, L., Murrieta, D.J., Hallman, C., Lindström, T., Miller, R.S., Portacci, K., Tildesley, M.J., Webb, C.T. 2019. Effects of regional differences and demography in modelling foot-and-mouth disease in cattle at the national scale. Royal Society Interface Focus, 10(1)

Gorsich, E.E., Miller, R.S., Mask, H.S., Hallman, C., Portacci, K., and Webb, C.T. 2019. Spatio-temporal patterns and characteristics of swine shipments in the U.S. based on Interstate Certificates of Veterinary Inspection. Scientific Reports 9(1), 3915.

Sellman, S., Tsao, K., Tildesley, M.J., Brommesson, P., Webb, C.T., Wennergren, U., Keeling, M.J., and Lindström, T. 2018. Need for speed: An optimized gridding approaches for spatially explicit disease simulations. PloS Computational Biology 14(4)

Gorsich, E., McKee, C.D., Grear, D.A., Miller, R.S., Portacci, K., Lindström, T., Webb, C.T. 2017. Model-guided suggestions for targeted surveillance based on cattle shipments in the U.S.. Preventive Veterinary Medicine, 150 (July 2017): 52-59.

Brommesson, P., Wennergren, U., and Lindström, T. 2016. Spatiotemporal variation in distance dependent animal movement contacts: one size doesn’t fit all. PLoS ONE 11(10): e0164008

Gorsich, E., Luis, A.D., Buhnerkempe, M.G., Grear, D.A., Portacci, K., Miller, R.S., and Webb, C.T. 2016. Mapping U.S. cattle shipment networks: spatial and temporal patterns of trade communities from 2009 to 2011. Preventive Veterinary Medicine, 134: 82-91.

Probert, W.J.M., Shea, K., Fonnesbeck, C.J., Runge, M.C., Webb, C.T., Tildesley, M.J., and Ferrari, M.J. 2016. Decision-making for foot-and-mouth disease control: objectives matter. Epidemics 15: 10-19.

Werkman, M, Tildesley, M.J., Brooks-Pollock, E., and Keeling, M.J. 2016. Preserving privacy whilst maintaining robust epidemiological predictions. Epidemics (17): 35-41.

Burdett, C.L., Kraus, B.R., Garza, S.J., Miller, R.S., and Bjork, K.E. 2015. Simulating the Distribution of Individual Livestock Farms and Their Populations in the United States: An Example Using Domestic Swine (Sus scrofa domesticus) Farms. Plos One.

Dawson P.M., Werkman, M., Brooks-Pollock, E., and Tildesley, M.J. 2015. Epidemic predictions in an imperfect world: modelling disease spread with partial data. Proceedings of the Royal Society B 282(1808).

McKee, C., Hallman, C., Webb, C.T., Lindstrom, T., Miller, R.S., and Portacci, K. 2015. USAMM Shiny Visualization (R package)

Buhnerkempe, M.G., Tildesley, M.J., Lindström, T., Grear, D.A., Portacci, K., Miller, R.S., Lombard, J., Werkman, M., Keeling, M.J., Wennergren, U., Webb, C.T. 2014. The impact of movements and animal density on continental scale cattle disease outbreaks in the United States. PLoS ONE 9(3): e91724

Grear, D.A., Kaneene, J.B., Averill, J.J., and Webb, C.T. 2014. Local cattle movments in response to ongoing bovine tuberculosis zonation and regulations in Michigan, USA. Preventative Veterinary Medicine. 114(3-4):201-12.

Tsao, K., Robbe-Austerman, S., Miller, R.S., Portacci, K., Grear, D.A., and Webb, C.T. 2014. Sources of bovine tuberculosis in the United States. Infection, Genetics and Evolution. 28C:137-143.

Buhnerkempe, M.G., Grear, D.A., Portacci, K., Miller, R.S., Lombard, J., and Webb, C.T. 2013. A national-scale picture of U.S. cattle movements obtained from Interstate Certificate of Veterinary Inspection data. Prev. Vet. Med.112: 318-329

Lindström, T., Grear, D.A., Buhnerkempe, M., Webb, C.T., Miller, R.S., Portacci, K., and Wennergren, U. 2013. A Bayesian approach for modeling cattle movements in the United States: scaling up a partially observed network. PLoS ONE 8(1): e53432

Portacci, K., Miller, R.S., Riggs, P.D., Buhnerkempe, M.G., and Abrahamsen, L.M. 2013. Assessment of paper interstate certificates of veterinary inspection used to support disease tracing in cattle. Journal of the American Veterinary Association 243(4): 555-560.

Lindström, T., Lewerin, S.S., and Wennergren, U. 2012. Influence on disease spread dynamics of herd characteristics in a structured livestock industry. Journal of the Royal Society Interface 9(71): 1287-1294.

Lindström T., Lewerin, S.S., and Wennergren, U. 2012. SpecNet: A spatial network algorithm that generates a wide range of specific structures. PLoS ONE.

Tildesley, M.J., Smith, G., and Keeling, M.J. 2012. Modeling the spread and control of foot-and-mouth disease in Pennsylvania following its discovery and options for control. Prev. Vet. Med. 104, 224-239.

Tildesley, M.J. and Ryan, S.J. 2012. Disease prevention versus data privacy: using landcover maps to inform spatial epidemic models. PLoS Computational Biology, 8 (11).

Lindström, T., Sisson, S.A., Lewerin, S.S., and Wennergren, U. 2011. Bayesian analysis of animal movements related to factors at herd and between herd levels: Implications for disease spread modeling. Preventive veterinary medicine 98: 230-242.

Tildesley, M.J., Volkova, V., and Woolhouse, M.E.J. 2011. Potential for Epidemic Take-off from the Primary Outbreak Farm via Livestock Movements. BMC Veterinary Research, 7:76.

Lindström, T, Sisson, S.A., Lewerin, S.S., Wennergren, U. 2010. Estimating Animal Movement Contacts between Holdings of Different Production Types. Preventive Veterinary Medicine 95 (1–2): 23–31

Lindström, T., Sisson, S.A., Nöremark, M., Jonsson, A., Wennergren, U. 2009. Estimation of Distance Related Probability of Animal Movements between Holdings and Implications for Disease Spread Modeling. Preventive Veterinary Medicine 91 (2–4): 85–94

Tildesley, M.J., Savill, N.J., Shaw, D.J., Deardon, R., Brooks, S.P., Woolhouse, M.E.J., Grenfell, B.T., Keeling, M. J. 2006. Optimal reactive vaccination strategies for a foot-and-mouth outbreak in the UK. Nature, 440(7080): 83-86.